- Iron Man: Director of SHIELD
- Reprints Iron Man #129 (December 1979); Iron Man #15-16 (April 2007 – May 2007); The Invincible Iron Man #17-18 (June 2007 – July 2007); Marvel Spotlight: Civil War Aftermath #1 (March 2007); & Strange Tales #135 (August 1965).
- She-Hulk, vol.5: Planet Without A Hulk
- Reprints She-Hulk #14-21 (February 2007 – October 2007).
- The Immortal Iron Fist, vol.1: The Last Iron Fist Story
- Reprints The Immortal Iron Fist #1-6 (January 2007 – July 2007); & Civil War: Choosing Sides #1 (December 2006; Iron Fist story only).
Occurs shortly after Daredevil: The Devil, Inside and Out, vol.1. 
The Immortal Iron Fist, vol.2: The Seven Capital Cities of Heaven- Reprints The Immortal Iron Fist #8-14 (October 2007 – June 2008) Annual #1 (November 2007).
- The Immortal Iron Fist, vol.3: The Book of the Iron Fist
- Reprints The Immortal Iron Fist #7 & 15-16 (August 2007 & July 2008 – August 2008); The Immortal Iron Fist: Orson Randall and The Green Mist of Death #1 (April 2008); & The Immortal Iron Fist: The Origin of Danny Rand #1 (August 2008).
These three Iron Fist volumes are effectively are single self-contained story, and fit best here. - Spider-Man: Back in Black
- Reprints Amazing Spider-Man #539-543 (April 2007 – October 2007); & Friendly Neighborhood Spider-Man #17-23 (April 2007 – October 2007) & Annual #1 (2007).
- Sensational Spider-Man: Back in Black
- Reprints Sensational Spider-Man #35-40 (April 2007 – September 2007) & Annual #1 (2007); Spider-Man Family #1-2 (April 2007 – June 2007); Spider-Man: Back in Black Handbook (June 2007); & Marvel Spotlight – Spider-Man: Back in Black (May 2007).
The two Back in Black weave in and out of each other. A more detailed reading order can be found here. - Daredevil: The Devil, Inside and Out, vol.2
- Reprints Daredevil #88-93 (October 2006 – March 2007).
Must occur after Fallen Son: The Death of Captain America. - Silent War
- Reprints Silent War #1-6 (March 2007 – August 2007).
Must happen after Civil War but before Black Panther: Four the Hard Way - Ms. Marvel, vol.3: Operation Lightning Storm
- Reprints Ms. Marvel #11-17 (March 2007 – September 2007).
Must happen before Omega Flight and Mighty Avengers: The Ultron Imperative. - New Avengers, vol.6: Revolution
- Reprints New Avengers #26-31 (January 2007 – August 2007).
- Uncanny X-Men: The Extremists
- Reprints Uncanny X-Men #487 (August 2007) & #488-491 (lead stories only, September 2007 – December 2007)
- X-Men: Endangered Species
- Reprints X-Men: Endangered Species #1 (August 2007); & back-up stories from New X-Men #40-42 (September 2007 – November 2007); Uncanny X-Men #488-491 (September 2007 – December 2007); X-Men #200-204 (August 2007 – December 2007); & New X-Factor #21-24 (September 2007 – December 2007).
Takes place during the early stages of New Avengers: Revolution, also includes previously unseen incidents from the Age of Apocalypse - Omega Flight: Alpha to Omega
- Reprints Omega Flight #1-5 (June 2007 – October 2007).
Must occur after Ms. Marvel: Lightning Storm. - Punisher War Journal, vol.2: Goin’ Out West
- Reprints Punisher War Journal #5-9 (May 2007 – September 2007).
- X-Men – Phoenix: Endsong / Warsong
- Reprints X-Men: Phoenix – Endsong #1-5 (March 2005 – June 2005); & X-Men: Phoenix – Warsong #1-5 (November 2006 – March 2007).
Warsong occurs at this time, while Endsong takes place earlier. - Runaways, vol.8: Dead End Kids
- Reprints Runaways #25-30 (June 2007 – August 2008).
- The Loners: The Secret Lives of Super Heroes
- Reprints The Loners #1-6 (June 2007 – January 2008).
- Daredevil: Hell to Pay, vol.1
- Reprints Daredevil #94-99 (April 2007 – September 2007).
- Daredevil: Hell to Pay, vol.2
- Reprints Daredevil #100-105 (October 2007 – April 2008).
- World War Hulk
- Reprints World War Hulk #1-5 (August 2007 – January 2008).
For a full reading order for this crossover, see here. World War Hulk: X-Men
- Reprints Avengers: The Initiative #4-5 (September 2007 – October 2007); Ghost Rider #12-13 (August 2007 – September 2007); The Invincible Iron Man #19-20 (August 2007 – September 2007); The Irredeemable Ant-Man #10 (September 2007); & World War Hulk: X-Men #1-3 (August 2007 – October 2007).
- Avengers: The Initiative, vol.1: Basic Training
- Reprints Avengers: The Initiative #1-6 (June 2007 – November 2007).
- World War Hulk: The Incredible Hercules
- Reprints Incredible Hulk #106-111 (July 2007 – December 2007).
- World War Hulk: Front Line
- Reprints World War Hulk Prologue: World Breaker #1 (July 2007); & World War Hulk: Front Line #1-6 (August 2007 – December 2007).
- Heroes For Hire, vol.3: World War Hulk
- Reprints Heroes for Hire #11-15 (August 2007 – December 2007).
- World War Hulk: Gamma Corps
- Reprints World War Hulk: Gamma Corps #1-4 (September 2007 – January2008).
- Ghost Rider, vol.3: Apocalypse Soon
- Reprints Ghost Rider #12-13 (August 2007 – September 2007) & Annual #1 (January 2008).
- Punisher War Journal, vol.3: Hunter/Hunted
- Reprints Punisher War Journal #12-17 (December 2007 – May 2008).
- The Irredeemable Ant-Man
- Reprints The Irredeemable Ant-Man #1-12 (December 2006 – November 2007).
- World War Hulk: Warbound
- Reprints World War Hulk Aftersmash: Warbound #1-5 (February 2008 – June 2008).
This volume is a World War Hulk: Aftersmash story. - World War Hulk: Damage Control
- Reprints World War Hulk Aftersmash: Damage Control #1-3 (March 2008 – May 2008); & World War Hulk: Aftersmash #1 (January 2008).
This volume is a World War Hulk: Aftersmash story. - Ms. Marvel: Monster Smash
- Reprints Ms. Marvel #18-24 (October 2007 – April 2008).
- Mighty Avengers, vol.1: The Ultron Initiative
- Reprints Mighty Avengers #1-6 (May 2007 – February 2008).
- –> Adam: Legend Of The Blue Marvel
- Reprints Adam: Legend of the Blue Marvel #1-5 (November 2008 – May 2009).
- Incredible Hercules vol.1: Against The World
- Reprints Incredible Hulk #112 (January 2008); Incredible Hercules #113-115 (February 2008 – April 2008); & Hulk vs. Hercules: When Titans Collide (June 2008).
This volume is a World War Hulk: Aftersmash story. - Hulk, vol.1: Red Hulk
- Reprints Hulk #1-6 (February 2008 – November 2008); & Wolverine #50 (March 2007).
Must occur before Sub-Mariner: Revolution - –> Hulk Smash Avengers
- Reprints Hulk Smash Avengers #1-5 (all July 2012).
The fifth story in this volume occurs during Hulk #2. The others occur here, here, here and here respectively. - The Order vol.1: The Next Right Thing
- Reprints The Order #1-5 (September 2007 – January 2008).
- Eternals: To Slay a God
- Reprints Eternals #1-6 (August 2008 – February 2009).
Takes place during The Order. - Sub-Mariner: Revolution
- Reprints Sub-Mariner #1-6 (August 2007 – January 2008).
- The Order vol. 2: California Dreaming
- Reprints The Order #6-10 (February 2008 – June 2008).
Must occur before New Avengers: Illuminati and X-Men: Messiah Complex, but after Sub-Mariner: Revolution. - Mighty Avengers, vol. 2: Venom Bomb
- Reprints Mighty Avengers #7-11 (March 2008 – May 2008).
- New Avengers, vol.7: The Trust
- Reprints New Avengers #32-37 (September 2007 – February 2008) & Annual #2 (February 2008).
The Trust has a plot that leads into The Ultron Initiative, while also paralleling events in Venom Bomb. - New Avengers: Illuminati
- Reprints New Avengers: Illuminati #1-5 (February 2007 – January 2008).
The last story in Illuminati must take place after Mighty Avengers: The Ultron Initiative - Iron Man, Director of SHIELD: Haunted
- Reprints Invincible Iron Man #21-28 (October 2007 – June 2008) & Annual #1 (January 2008).
- The New Fantastic Four
- Reprints Fantastic Four #544-550 (May 2007 – December 2007).
This story takes place immediately prior to Black Panther: Four the Hard Way. - Black Panther: Four The Hard Way
- Reprints Black Panther #26-30 (May 2007 – October 2007).
This story crosses into the Zombieverse. - X-Men: Marauders
- Reprints X-Men #188-204 (September 2006 – December 2007; main stories only) & Annual #1 (March 2007).
- Black Panther: Little Green Men
- Reprints Black Panther #31-34 (December 2007 – March 2008).
- Thunderbolts by Warren Ellis, vol.1: Faith in Monsters
- Reprints Thunderbolts #110-115 (March 2007 – August 2007); Civil War: Choosing Sides #1 (December 2006); Civil War: The Initiative #1 (April 2007); & Thunderbolts: Desperate Measures #1 (September 2007).
Must occur prior to Nova: Annihilation – Conquest. - Nova, vol.1: Annihilation – Conquest
- Reprints Nova #1-7 (June 2007 – December 2007).
- Annihilation: Conquest, Book 1
- Reprints Annihilation: Conquest Prologue #1 (August 2007); Annihilation: Conquest – Quasar #1-4 (September 2007 – December 2007); Annihilation: Conquest – Starlord #1-4 (September 2007 – December 2007); & Annihilation Saga #1 (May 2007).
Parallels the latter part of Nova: Annihilation – Conquest. For a more detailed reading order of this storyline, go here. - Nova vol.2: Knowhere
- Reprints Nova #8-12 (January 2008 June 2008) & Annual #1 (April 2008).
- Annihilation: Conquest, Book 2
- Reprints Annihilation: Conquest #1-6 (January 2008 – June 2008); Annihilation: Conquest – Wraith #1-4 (September 2007 – December 2007); & Nova #4-7 (September 2007 – December 2007).
Annihilation: Conquest 2 reprints some of the same issues Nova: Annihilation – Conquest, and the events of Nova: Knowhere take place during AC 2. - X-Men: Emperor Vulcan
- Reprints X-Men: Emperor Vulcan #1-5 (November 2007 – March 2008).
More or less parallels the events of Annihilation: Conquest. - Thor by J. Michael Straczynski, vol.1
- Reprints Thor #1-6 (September 2007 – February 2008).
- Wolverine: The Death of Wolverine
- Reprints Wolverine #56-61 (October 2007 – March 2008).
- Spider-Man: One More Day
- Reprints Amazing Spider-Man #544-545 (November 2007 – January 2008); Sensational Spider-Man #41 (December 2007); Friendly Neighborhood Spider-Man #24 (November 2007); & Marvel Spotlight: Spider-Man – One More Day/Brand New Day (December 2007).
NewThe Marvel Universe 21: 2007
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Hey your reading order is pretty awesome. It’s what I’ve been looking for, chronological reading order. But you’re missing quite a few books like Wolverine Origins, New Warriors, Astonishing X-Men, Agents of Atlas, Blade, Exiles, Excalivur, Ghost Rider: Heaven’s on fire, Heroes for Hire, X-Factor, Penance : Relentles and X-Men: Die by the sword.
I know its a lot lol but I’m a completionist. I’m probably missing a few for this time period.
Believe me, I want to include everything I can, but it’s just such a big task, and I can only work on it in my spare time.