- House of M: Excalibur – Prelude
- Reprints Excalibur #11-14 (May 2005 – July 2005).
- House of M
- Reprints House of M #1-8 (August 2005 – November 2005); & The Pulse: House of M Special #1 (September 2005).
This story crosses over with the House of M universe, naturally. A full reading order for the crossover can be found here - New Thunderbolts, vol.2: Modern Marvels
- Reprints New Thunderbolts #7-12 (June 2005 – November 2005).
Contains a House of M crossover. - Decimation: X-Men – The Day After
- Reprints Decimation: House of M – The Day After #1 (January 2006); & X-Men #177-181 (January 2006 – March 2006).
- Decimation: X-Men – Generation M
- Reprints Generation M #1-5 (January 2006 – May 2006).
- Decimation: Sentinel Squad O*N*E
- Reprints Sentinel Squad O*N*E #1-5 (March 2006 – July 2006).
- Decimation: X-Men – The 198
- Reprints X-Men: The 198 #1-5 (March 2006 – July 2006); & X-Men: The 198 Files #1 (March 2006).
- New Excalibur, vol.1: Defenders Of The Realm
- Reprints New Excalibur #1-7 (January 2006 – July 2006).
Must occur before Deadly Genesis. - X-Men: Deadly Genesis
- Reprints X-Men: Deadly Genesis #1-6 (January 2006 – July 2006).
- Spider-Man/Black Cat: The Evil That Men Do
- Reprints Spider-Man/Black Cat: The Evil That Men Do (August 2002 – March 2006).
- Sentry: Reborn
- Reprints Sentry #1-8 (November 2006 – June 2007).
- The Thing: Idol of Millions
- Reprints The Thing #1-8 (January 2006 – August 2006).
Young Avengers, vol.2: Family Matters- Reprints Young Avengers #7-12 (October 2005 – August 2006) & Special #1 (February 2006).
Must occur before Jessica Jones quits her job at the Daily Bugle. - Nextwave: Agents Of H.A.T.E., vol.1: This Is What They Want
- Reprints Nextwave: Agents of H.A.T.E. #1-6 (March 2006 – August 2006).
The two volumes of Nextwave: Agents of H.A.T.E. do not connect with any other stories being published at that time, and are best read one after the other. - Nextwave: Agents of H.A.T.E., vol.2: I Kick Your Face
- Reprints Nextwave: Agents of H.A.T.E. #7-12 (September 2006 – February 2007).
Despite more or less paralleling it in publication, Nextwave: Agents of H.A.T.E. occurs entirely prior to Civil War. - Black Panther: Bad Mutha
- Reprints Black Panther #10-13 (January 2006 – April 2006).
Occurs after Monica Rambeau joins Nextwave. - New Thunderbolts, vol.3: Right Of Power
- Reprints New Thunderbolts #13-18 (December 2005 – April 2006); & Thunderbolts #100 (May 2006).
Must occur after the Avengers publicly announce their reformation. - Marvel Team-Up, vol.3: League of Losers
- Reprints Marvel Team-Up #14-18 (January 2006 – May 2006).
This volume features a crossover with the Invincible Universe. - The Pulse, vol.3: Fear
- Reprints The Pulse #11-14 (November 2005 – May 2006); & New Avengers #1 (June 2006).
Must occur after Jessica Jones quits her job at the Daily Bugle. - Runaways, vol.5: Escape to New York
- Reprints Runaways #7-12 (October 2005 – March 2006).
Cage mentions that he is now a father in this book - Runaways, vol.6: Parental Guidance
- Reprints Runaways #13-18 (April 2006 – October 2006).
- Spider-Man: The Other
- Reprints The Amazing Spider-Man #525-528 (December 2005 – March 2006); Friendly Neighborhood Spider-Man #1-4 (December 2005 – March 2006); & Marvel Knights Spider-Man #19-22 (December 2005 – March 2006).
- X-Men by Peter Milligan: Blood of Apocalypse
- Reprints Cable & Deadpool #26-27 (May 2006 – June 2006) & X-Men #177-187 (Januart 2006 – August 2006).
- X-Factor, vol.1: The Longest Night
- Reprints X-Factor #1-6 (January 2006 – June 2006).
- Iron Man, vol.2: Execute Program
- Reprints Iron Man #7-12 (June 2006 – November 2006).
- Moon Knight, vol.1: The Bottom
- Reprints Moon Knight #1-6 (June 2006 – November 2006).
- Fantastic Four: The Life Fantastic
- Reprints Fantastic Four #533-535 (January 2006 – April 2006) & Special #1 (February 2006); Fantastic Four: A Death in the Family #1 (July 2006); & Fantastic Four: The Wedding Special #1 (January 2006).
- Incredible Hulk: Prelude to Planet Hulk
- Reprints Incredible Hulk #88-91 (January 2006 – March 2006); & Official Handbook of the Marvel Universe: Hulk 2004 (2004).
- Marvel Knights Fantastic Four, vol.5: The Resurrection of Nicholas Scratch
- Reprints Marvel Knights 4 #25-27 (February 2006 – April 2006); & Four #28-30 (May 2006 – August 2006).
Immediately follows Prelude to Planet Hulk but precedes Road to Civil War 
Captain America: Red Menace, Book One- Reprints Captain America #15-17 (April 2006 – June 2006) & 65th Anniversary Special #1 (May 2006).
- Captain America: Red Menace, Book Two
- Reprints Captain America #18-21 (July 2006 – October 2006).
- Union Jack: London Falling
- Reprints Union Jack #1-4 (November 2006 – February 2007).
- Ares: God of War
- Reprints Ares #1-5 (March 2006 – July 2006).
- Ghost Rider, vol.1: Vicious Cycle
- Reprints Ghost Rider #1-5 (September 2006 – January @007).
- Beyond!
- Reprints Beyond! #1-6 (September 2006 – February 2007).
- Runaways, vol.4: True Believers
- Reprints Runaways #1-6 (April 2006 – September 2006).
- The Road to Civil War
- Reprints New Avengers: Illuminati #1 (May 2006); Fantastic Four #536-537 (May 2006 – June 2006); & Amazing Spider-Man #529-531 (April 2006 – June 2006).
Must occur after the Prelude to Planet Hulk. - Decimation: X-Men – Son of M
- Reprints Son of M #1-6 (February 2006 – July 2006).
Although labelled a Decimation title, it fits best here based on Black Bolt’s appearances in the three immediately preceding books. - Incredible Hulk: Planet Hulk
- Reprints Incredible Hulk #92-105 (April 2006 – June 2007); Planet Hulk: Gladiator Guidebook #1 (July 2006); Amazing Fantasy #15 (January 2006); & Giant-Size Hulk #1 (August 2006).
The Silver Surfer’s appearance here must occur before his appearances in the Annihilation books. - Annihilation, Book 1
- Reprints Drax the Destroyer #1-4 (November 2005 – February 2006); Annihilation Prologue #1 (April 2006); & Annihilation: Nova #1-4 (June 2006 – September 2006).
For a more detailed reading order of this event, go here. - Annihilation, Book 2
- Reprints Annihilation: Ronan #1-4 (June 2006 – September 2006); Annihilation: Silver Surfer #1-4 (June 2006 – September 2006); & Annihilation: Super-Skrull #1-4 (June 2006 – September 2006).
- Uncanny X-Men: Rise & Fall of the Shi’ar Empire
- Reprints Uncanny X-Men #475-486 (September 2006 – July 2007).
Occurs more or less in parallel with Annihilation. - Daredevil, vol.13: The Murdock Papers
- Reprints Daredevil #76-81 (October 2005 – March 2006).
- New Avengers, vol.4: The Collective
- Reprints New Avengers #14-20 (April 2006 – August 2006).
Must occur after Spider-Man gets the ‘Iron Spider‘ costume in Road to Civil War. - Ms. Marvel, vol.1: Best of the Best
- Reprints Giant-Size Ms. Marvel #1 (April 2006); & Ms. Marvel #1-5 (May 2006 – September 2006).
Contains a story set during House of M, but is best read following her appearance in New Avengers: the Collective. It immediately leads into Civil War. - Black Panther: The Bride
- Reprints Black Panther #14-18 (May 2006 – September 2006).
This story overlaps with Civil War but contains no particular plot spoilers and can safely be read before the main action of Civil War. - Civil War
- Reprints Civil War #1-7 (July 2006 – January 2007).
A complete reading order for this event can be found here. - Civil War: Front Line, Book 1
- Reprints Civil War: Front Line #1-6 (August 2006 – November 2006).
- New Avengers, vol.5: Civil War
- Reprints New Avengers #21-25 (August 2006 – December 2006).
- Cable & Deadpool, vol.6: Paved with Good Intentions
- Reprints Cable & Deadpool #30-35 (September 2006 – February 2007).
- Black Panther: Civil War
- Reprints Black Panther #19-25 (October 2006 – April 2007).
- Ms. Marvel, vol.2: Civil War
- Reprints Ms. Marvel #6-10 (October 2006 – February 2007) & Special #1 (March 2007).
- Civil War: X-Men
- Reprints Civil War: X-Men #1-4 (September 2006 – December 2006).
- Civil War: Thunderbolts
- Reprints Thunderbolts #101-105 (Hune 2006 – October 2006).
- Civil War: Heroes For Hire
- Reprints Heroes For Hire #1-5 (October 2006 – February 2007).
- Punisher War Journal, vol.1: Civil War
- Reprints Punisher War Journal #1-4 (January 2007 – April 2007).
Captain America, vol.5: Civil War- Reprints Captain America #22-24 (November 2006 – January 2007); & Captain America: Winter Kills #1 (February 2007).
- Civil War: War Crimes
- Reprints Civil War: War Crimes #1 (February 2007); & Underworld #1-5 (April 2006 – August 2006).
- Civil War: Fantastic Four
- Reprints Fantastic Four #538-543 (August 2006 – March 2007).
Amazing Spider-Man and Fantastic Four also cross over with each other. - Civil War: Amazing Spider-Man
- Reprints Amazing Spider-Man #532-538 (July 2006 – March 2007).
Amazing Spider-Man and Fantastic Four also cross over with each other. - Civil War: Marvel Universe
- Reprints Civil War: Choosing Sides #1 (December 2006); Civil War: The Initiative #1 (April 2007); Civil War: The Return #1 (March 2007); & She-Hulk #8 (July 2006).
- Civil War: Young Avengers & Runaways
- Reprints Civil War: Young Avengers & Runaways #1-4 (September 2006 – December 2006).
- Civil War: Wolverine
- Reprints Wolverine #42-48 (July 2006 – January 2007).
- X-Factor, vol.2: Life and Death Matters
- Reprints X-Factor #7-12 (July 2006 – December 2006).
- Civil War: Peter Parker, Spider-Man
- Reprints The Sensational Spider-Man #28-34 (September 2006 – March 2007).
- She-Hulk, vol.4: Laws of Attraction
- Reprints She-Hulk #6-13 (May 2006 – December 2006).
- Thunderbolts: Guardian Protocols
- Reprints Thunderbolts #106-109 (November 2006 – February 2007).
- Ghost Rider, vol.2: The Life & Death of Johnny Blaze
- Reprints Ghost Rider #6-11 (February 2007 – July 2007).
- Civil War: Front Line, Book 2
- Reprints Civil War: Front Line #7-11 (December 2006 – April 2007).
This volume contains epilogue stories to Civil War and is best read at the end of the storyline. - The Death of Captain America, vol.1: The Death of the Dream
- Reprints Captain America #25-30 (April 2007 – November 2007).
This volume contains epilogue stories to Civil War and is best read at the end of the storyline. - Fallen Son: The Death of Captain America
- Reprints Fallen Son: The Death of Captain America #1-5 (June 2007 – August 2007).
- Iron Man, vol.3: Civil War
- Reprints Iron Man #13-14 (December 2006 – January 2007); Iron Man/Captain America: Casualties of War #1 (February 2007); & Civil War: The Confession #1 (May 2007).
This volume contains epilogue stories to Civil War and is best read at the end of the storyline. - Annihilation, Book 3
- Reprints Annihilation #1-6 (October 2006 – March 2007); Annihilation: The Nova Corps Files #1 (October 2006); & Annihilation: Heralds Of Galactus #1-2 (April 2007 – May 2007).
This volume occurs during Civil War, but do not directly cross over with it. - Eternals
- Reprints Eternals #1-7 (August 2006 – March 2007).
This volume occurs during Civil War, but do not directly cross over with it. - Moon Knight, vol.2: Midnight Sun
- Reprints Moon Knight #7-13 (January 2007 – December 2007) & Annual #1 (January 2008).
This volume occurs during Civil War, but do not directly cross over with it. - Runaways Vol. 7: Live Fast
- Reprints Runaways #19-24 (October 2006 – March 2007).
Contains events that occur both before and after Civil War: Young Avengers/Runaways, but is best read here. - Daredevil: The Devil, Inside and Out, vol.1
- Reprints Daredevil #82-87 (April 2006 – September 2006).
Occurs more or less in parallel with Civil War, but finishes after it. - White Tiger: A Hero’s Compulsion
- Reprints White Tiger #1-6 (January 2007 – November 2007).
Occurs in parallel with Daredevil: The Devil, Inside and Out, vol.1 but takes place immediately prior to Civil War – placed here to avoid spoilers for the Daredevil story. - Thunderbolts Presents: Zemo – Born Better
- Reprints Thunderbolts Presents: Zemo – Born Better #1-4 (April 2007 – July 2007)>.
Occurs immediately after Civil War.
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